Suzume, 17, lost her mother as a little girl. On her way to school, she meets a mysterious young man. But her curiosity unleashes a calamity that endangers the entire population of Japan, and so Suzume embarks on a journey to set things right.

Tokyo is currently experiencing rain showers that seem to disrupt the usual pace of everyone living there to no end. Amidst this seemingly eternal downpour arrives the runaway high school student Hodaka Morishima, who struggles to financially support himself—ending up with a job at a small-time publisher. At the same time, the orphaned Hina Amano also strives to find work to sustain herself and her younger brother. Both fates intertwine when Hodaka attempts to rescue Hina from shady men, deciding to run away together. Subsequently, Hodaka discovers that Hina has a strange yet astounding power: the ability to call out the sun whenever she prays for it. With Tokyo's unusual weather in mind, Hodaka sees the potential of this ability. He suggests that Hina should become a "sunshine girl"—someone who will clear the sky for people when they need it the most. Things begin looking up for them at first. However, it is common knowledge that power always comes with a hefty price...

High schoolers Mitsuha and Taki are complete strangers living separate lives. But one night, they suddenly switch places. Mitsuha wakes up in Taki’s body, and he in hers. This bizarre occurrence continues to happen randomly, and the two must adjust their lives around each other.

Takao, who is training to become a shoemaker, skipped school and is sketching shoes in a Japanese-style garden. He meets a mysterious woman, Yukino, who is older than him. Then, without arranging the times, the two start to see each other again and again, but only on rainy days. They deepen their relationship and open up to each other. But the end of the rainy season soon approaches …

Three moments in Takaki's life: his relationship with Akari and their forced separation; his friendship with Kanae, who is secretly in love with him; the demands and disappointments of adulthood, an unhappy life in a cold city.